Publications

The following publications are derived from data generated by or important to the consortium. Links to the supporting project (when public) and the online publication (when available) are provided.

Publications Inventory
Consortium Publications		Abstracts		Talks		Related Manuscripts
Published In Press In Preparation	107 7 47	Published	80	Published	59	Published In Press In Preparation	24 0 0

Publications Derived from Consortium Projects

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Albert Y, Whitehead J, Eldredge L, Carter J, Gao X, and Tourtellotte W, Transcriptional regulation of myotube fate specification and intrafusal muscle fiber morphogenesis; J Cell Biol., 2005, 2; 169:257-68 View Online Open Project

Bassuk AG, Craig D, Jalai A, Mukopadhyay A, Kim F, Charrow J, Gulgu U, Epstein LG, Bowman R, Mclone D, Yagi H, Matsuoka R, Stephan DA, and Kessler J, The genetics of tethered cord syndrome; Am J Mole Gen, 2004, 22;132A(4):450-453

Bilguvar K et al. , Susceptibility loci for intercranial aneurysm in European and Japanese populations.; Nat. Genet., 2008, 40; 12:1472-7

Bough, KJ, J Wetherington, B Hassel, JF Pare, J Gawryluk, JG Greene, R Shaw, Y Smith, JD Geiger, R Dingledine, Mitochondrial biogenesis in the anticonvulsant mechanism of the ketogenic diet; Ann. Neurology, 2006, 2; 60:223-35 View Online Open Project

Bunney WE, Bunney BG, Vawter MP, Tomita H, Li J, Evans SJ, Choudary PV, Myers RM, Jones EG, Watson SJ, Akil H, Microarray technology: a review of new strategies to discover candidate vulnerability genes in psychiatric disorders.; Am J Psychiatry, 2003, 4; 160:657-66

Carlson MR, Pope WB, Horvath S, Braunstein JG, Nghiemphu P, Tso CL, Mellinghoff I, Lai A, Liau LM, Mischel PS, Dong J, Nelson SF, Cloughesy TF., Relationship between survival and edema in malignant gliomas: role of vascular endothelial growth factor and neuronal pentraxin 2.; Clin Cancer Res., 2007, 9; 13:2592-8

Carter JH, Lefebvre JM, Wiest DL, Tourtellotte WG, Redundant role for early growth response transcriptional regulators in thymocyte differentiation and survival; J Immunol, 2007, 178; 11:796-805 View Online Open Project

Cha YH, Lee H, Jen JC, Kattah JC, Nelson SF, Baloh RW., Episodic vertical oscillopsia with progressive gait ataxia: clinical description of a new episodic syndrome and evidence of linkage to chromosome 13q.; J Neurol Neurosurg Psychiatry., 2007, 11; 78:1273-5

Chaturvedi RK, Adhihetty P, Shukla S, Hennessy T, Calingasan N, Yang L, Starkov A, Kiaei M, Cannella M, Sassone J, Ciammola A, Squitieri F, Beal MF., Impaired PGC-1{alpha} function in muscle in Huntington's disease.; Hum Mol Gen., 2009

Cobos I, Borello U, Rubenstein JLR, Dlx transcription factors promote migration through repression of axon and dendrite growth. Neuron; Neuron, 2007; 54:873-888

Cobos I, Borello U, Rubenstein JLR., Dlx transcription factors promote migration through repression of axon and dendrite growth.; Neuron, 2007; 54:873-888

Coon KD, Dunckley T, and Stephan DA, Biomarker identification in neurologic disease to facilitate improved diagnostics and therapeutics; Exp Rev Mol Diag, 2004, 3:4:361-375

Craig DW, Huentelman MJ, Hu-Lince D, Zismann VL, Kruer MC, Lee AM, Puffenberger EG, Pearson JM, Stephan DA, Identification of disease causing loci using an array-based genotyping approach on pooled DNA; BMC Genomics, 2005, 138; 6

Craig,DW and Stephan DA, Applications of Whole-Genome High-Density SNP Genotyping; Exp Rev Mol Diag, 2005, 2; 5:159-170 View Online

Cudrici C, Ito T, Zafranskaia E, Weerth S, Chen HH, Gherman A, Soloviova K, Rus V, Raine CS & Rus H., Complement C5 regulates insulin-like growth factors binding proteins in chronic experimental allergic encephalomylitis; Proceedings of 13th International Congress of Immunology , 2007:259-264

Dobrin S and Stephan D, Integrating microarrays into disease-gene identification strategies; Expert Rev Mol Diagn, 2003, 3:375-85 View Online

Donarum EA, Halperin RF, Stephan DA, Narayanan V, Cognitive dysfunction in NF1 knock-out mice may result from altered vesicular trafficking of APP/DRD3 complex; BMC Neuroscience, 2006; 7:22 View Online Open Project

Donarum EA, Stephan DA, Larkin K, Murphy EJ, Gupta M, Senephansiri H, Switzer RC, Pearl PL, Snead OC, Jakobs C, Gibson KM, Expression profiling reveals multiple myelin alterations in murine succinate semialdehyde dehydrogenase deficiency; J Inherit Metab Dis, 2006, 1; 29:143-56 View Online Open Project

Dunckley T, Beach TG, Ramsey KE, Grover A, Mastroeni D, Walker DG, Lafleur BJ, Coon KD, Brown KM, Caselli R, Kukull W, Higdon R, McKeel D, Morris JC, Hulette C, Schmechel D, Reiman EM, Rogers J, Stephan DA., Gene expression correlates of neurofibrillary tangles in Alzheimer's disease; Neurobiol Aging, 2005 View Online

Dunckley T, Coon, KD and Stephan DA, Discovery and development of biomarkers of neurological disease; Drug Discovery Today, 2005, 5; 10:326-34 View Online

Fernald GH, Knott S, Pachner A, Caillier SJ, Narayan K, Oksenberg JR, Mousavi P, Baranzini SE., Genome-wide network analysis reveals the global properties of IFN-beta immediate transcriptional effects in humans.; J Immunol., 2007, 178; 8:5076-85

Fiala M, Liu PT, Espinosa-Jeffrey A, Rosenthal MJ, Bernard G, Ringman JM, Sayre J, Zhang L, Zaghi J, Dejbakhsh S, Chiang B, Hui J, Mahanian M, Baghaee A, Hong P, Cashman J., Innate immunity and transcription of MGAT-III and Toll-like receptors in Alzheimer's disease patients are improved by bisdemethoxycurcumin.; Proc Natl Acad Sci U S A. , 2007, 104; 31:12849-54 View Online

Freije WA, Castro-Vargas FE, Fang Z, Horvath S, Cloughesy T, Liau LM, Mischel PS, Nelson SF, Gene expression profiling of gliomas strongly predicts survival; Cancer Research, 2004, 18; 64:6503-10 View Online Open Project

Frye, C.A., Walf, A.A., Membrane actions of progestins at dopamine type 1-like and GABA(A) receptors involve downstream signal transduction pathways.; Steroids, 2008; 73:906-13

Fuchshofer R, Russell P, Stephan DA & Tamm ER. , Gene expression profiling of TGF beta2 and/or BMP-7 treated trabecular meshwork cells: identification of Smad 7 as a critical inhibitor of TGF beta2 signaling; Experimental Eye Research , 2009 Open Project

Fukuhara C and Tosini G. , Analysis of daily and circadian gene expression in the rat pineal gland; Neuroscience Research , 2007:1-7 Open Project

Fulp CT, Cho G, Marsh ED, Nasrallah IM, Labosky PA, & Golden JA, Identification of Arx transcriptional targets in the developing basal forebrain.; Human Molecular Genetics, 2008, 23; 17:3740-3760. View Online Open Project

Gaglani SM, Lu L, Williams RW, Rosen GD., The genetic control of neocortex volume and covariation with patterns of gene expression in mice; BMC Neuroscience, 2009, 1; 10:44 Open Project

Ghiani CA, Beltran-Parrazal L, Sforza DM, Malvar JS, Seksenyan A, Cole R, Smith DJ, Charles A, Ferchmin PA, de Vellis J., Genetic program of neuronal differentiation and growth induced by specific activation of NMDA receptors.; Neurochemical Research , 2007, 2; 32:363-76 View Online

Ghiani CA, Lelievre V, Beltran-Parrazal L, Sforza DM, Malvar J, Smith DJ, Charles AC, Ferchmin PA, de Vellis J, Gene expression is differentially regulated by neurotransmitters in embryonic neuronal cortical culture; J Neurochem, 2006, Suppl 1; 97:35-43 View Online Open Project

Gong J, Zhao Y, Abdel-Fattah R, Amos S, Xiao A, Lopes MBS, Hussaini IM &Laws ER. , Matrix metalloproteinase-9, a potential biological marker in invasive pituitary adenomas; Pituitary , 2007 Open Project

Greene JG, Dingledine R, and Greenamyre JT, Gene expression profiling of rat midbrain dopamine neurons: implications for selective vulnerability in parkinsonism; Neurobiol Dis, 2005, February:18(1): 19-31 Open Project

Gurnett CA, Alaee F, Bowcock AM, Kruse L, Lenke LG, Bridwell KH, Kukio T, Luhmann SJ, Dobbs MB., Genetic Linkage Localizes the Adolescent Idiopathic Scoliosis and Pectus Excavatum Gene to the 18q Chromosome; Spine, 2009, 2; 34:94-100

Gurnett CA, Alaee F, Kruse LM, Desruisseau DM, Hecht JT, Wise CA, Bowcock AM, Dobbs MB, Asymmetric lower limb malformations in individuals with homeobox PITX1 gene mutations; Am J Hum Genet, 2008, 5; 83:616-22

Gurnett CA, Alaee F, Kruse LM, Desruisseau DM, Hecht JT, Wise CA, Bowcock AM, Dobbs MB, Asymmetric lower limb malformations in individuals with homeobox PITX1 gene mutations. ; Am J Hum Genet, 2008, 5; 83:616-22

Gustavsson M, Wilson MA, Mallard C, Johnston MV, & Hagberga H, Global gene expression in the developing brain after hypoxic preconditioning: involvement of apoptotic mechanisms; Pediatric Research, 2007, 61; 4:444-5

Hagberga H, Gustavsson M, Mallard C, Vannucci SJ, Johnston MV, Wilson MA, Vascular response to hypoxic preconditioning in the immature brain; J Cereb Blood Flow Metab. , 2007, 5; 27:928-38 Open Project

Heffron DS, Landreth GE, Samuels IS, Mandell JW, Brain-Specific Deletion of Extracellular Signal-Regulated Kinase 2 Mitogen-Activated Protein Kinase Leads to Aberrant Cortical Collagen Deposition.; Am J Pathol, 2009; 175:2586-2599

Hu-Lince D, Craig DW, Huentelman MJ, Stephan DA, The Autism Genome Project: goals and strategies; Am J Pharmacogenomics, 2005, 4; 5:233-46

Huentelman MJ, Craig DW, Shieh AD, Corneveaux JJ, Hu-Lince D, Pearson JV, Stephan DA, SNiPer: improved SNP genotype calling for Affymetrix 10K GeneChip microarray data; BMC Genomics, 2005, 149; 6 View Online

Hussaini IM, Trotter C, Zhao Y, Abdel-Fattah R, Amos S, Xiao A, Agi CU, Redpath GT, Fang Z, Leung GKK, Lopes MBS & Laws ER, Matrix metalloproteinase-9 is differentially expressed in nonfunctioning invasive and noninvasive pituitary adenomas and increases invasion in human pituitary adenoma cell line; AJP, 2007, 1; 170:356-365 Open Project

Itoh Y, Melamed E, Yang X, Kampf K, Wang S. Yehya N, Van Nas A, Replogle K, Band MR, Clayton DF, Schadt EE, Lusis AJ, Arnold AP, Dosage compensation is less effective in birds than in mammals; Journal of Biology, 2007, 1; 6:2 View Online Open Project

Jeong J, Li X, McEvilly R, Rosenfeld M, Lufkin T, and Rubenstein J, Dlx genes pattern mammalian jaw primordium by regulating both lower jaw- and upper jaw-specific genetic programs; Development, 2008; 135:2905-2916

Jeong J, Li X, McEvilly RJ, Rosenfeld MG, Lufkin T, Rubenstein JL., Dlx genes pattern mammalian jaw primordium by regulating both lower jaw-specific and upper jaw-specific genetic programs.; Development., 2008, 135; 17:2905-16

Jevsek M, Jaworski A, Polo-Parada L, Kim N, Fan J, Landmesser LT, Burden SJ, CD24 is expressed by myofiber synaptic nuclei and regulates synaptic transmission; Proc Natl Acad Sci, 2006, 16; 103:6374-9 View Online Open Project

Johnson MB, Kawasawa YI, Mason CE, Krsnik Z, Coppola G, Bogdanović D, Geschwind DH, Mane SM, State MW, & Sestan N. , Functional and evolutionary insights into human brain development through global transcriptome analysis. ; Neuron, 2009, 4; 62:494-509

Kfoury N & Kapatos G. , Identification of neuronal target genes for CCAAT/Enhancer Binding Proteins; Molecular and Cellular Neuroscience, 2009, 3; 40:313-27

Kidd M, Modlin IM, Eick GN, Camp RL, Mane SM., Role of CCN2/CTGF in the proliferation of Mastomys enterochromaffin-like cells and gastric carcinoid development.; Am J Physiol Gastrointest Liver Physiol. , 2007, 1; 292:191-200 View Online

Koh S, Chung H, Xia H, Mahadevia A, Song Y, Environmental enrichment reverses the impaired exploratory behavior and altered gene expression induced by early-life seizures; J Child Neurology, 2005, 10; 20:796-802 View Online Open Project

Koh S, Magid R, Chung H, Stine CD, & DN Wilson. , Depressive behavior and selective down-regulation of serotonin receptor expression after early-life seizures: reversal by environmental enrichment.; Epilepsy & Behavior. , 2007; 10:26-31

Learn CA, Fecci PE, Schmittling RJ, Xie W, Karikari I, Mithell DA, Archer GE, Wei Z, Dressman H, & Sampson JH. , Profiling of CD4+, CD8+, and CD4+CD25+CD45RO+FoxP3+ T-cells in patients with malignant glioma reveals differential expression of the immunologic transcriptome compared to T-cells from healthy volunteers.; Clinical Cancer Research, 2006, 12:7306-7315

Learn CA, Grossi PM, Schmittling RJ, Xie W, Mitchell DA, Karikari I, Wei Z, Dressman H, & Sampson J. , Genetic analysis of intracranial tumors in a murine model of glioma demonstrate a shift in gene expression in response to host immunity.; Journal of Neuroimmunology, 2007, 182:63-72

Lee H, Jen JC, Cha YH, Nelson SF, Baloh RW., Phenotypic and Genetic Analysis of a Large Family With Migraine-Associated Vertigo.; Headache, 2007

Lee TS, Mane S, Eid T, Zhao H, Lin A, Guan Z, Kim JH, Schweitzer J, King-Stevens D, Weber P, Spencer SS, Spencer DD, de Lanerolle NC., Gene expression in temporal lobe epilepsy is consistent with increased release of glutamate by astrocytes.; Mol Med, 2007, 1; 13:1-13 View Online

Li L, Carter J, Gao X, Whitehead J, Tourtellotte WG., The neuroplasticity-associated arc gene is a direct transcriptional target of early growth response (Egr) transcription factors.; Mol Cell Biol. , 2005, 25; 23:10286-300 Open Project

Liang WS, Dunckley T, Beach TG, Grover A, Mastroeni D, Ramsey K, Caselli RJ, Kukull WA, McKeel D, Morris JC, Hulette CM, Schmechel D, Reiman EM, Rogers J, Stephan DA., Altered neuronal gene expression in brain regions differentially affected by Alzheimer's disease: a reference data set.; Physiol Genomics., 2008, 2; 33:240-56 Open Project

Liang WS, Dunckley T, Beach TG, Grover A, Mastroeni D, Ramsey K, Caselli RJ, Kukull WA, McKeel D, Morris JC, Hulette CM, Schmechel D, Reiman EM, Rogers J, Stephan DA., Neuronal gene expression in non-demented individuals with intermediate Alzheimer's Disease neuropathology. ; Neurobiol Aging., 2008 View Online Open Project

Liang WS, Dunckley T, Beach TG, Grover A, Mastroeni D, Walker DG, Caselli RJ, Kukull WA, McKeel D, Morris JC, Hulette C, Schmechel D, Alexander GE, Reiman EM, Rogers J, Stephan DA , Gene expression profiles in anatomically and functionally distinct regions of the normal aged brain; Physiological Genomics, 2007, 3; 28:311-322 Open Project

Liang WS, Reiman EM, Valla J, Dunckley T, Beach TG, Grover A, Niedzielko TL, Schneider LE, Mastroeni D, Caselli R, Kukull W, Morris JC, Hulette CM, Schmechel D, Rogers J, Stephan DA., Alzheimer's disease is associated with reduced expression of energy metabolism genes in posterior cingulate neurons.; Proc Natl Acad Sci U S A., 2008, 11; 105:4441-6 View Online Open Project

Liu X, Serova L, Kvetnanský R, & Sabban EL., Repertoire of changes in gene expression in rat adrenal medulla with single and repeated immobilization stress; Ann N Y Acad Sci., 2008, 1148:1-28 Open Project

Liu Y, Brandon M, Navathe S, Dingledine R, Ciliax BJ, Text mining functional keywords associated with genes; Medinfo. 2004, 2004, part 1; 11:292-296 View Online

Liu Y, Ciliax BJ, Borges K, Dasigi V, Ram A, Navathe SB, Dingledine R, Comparison of two schemes for automatic keyword extraction from MEDLINE for functional gene clustering; Proc IEEE Comput Syst Bioinform Conf. 2004, 2004, 1; 1:394-404 View Online

Liu Y, Navathe S, Civera J, Dasigi, V., Ram A, Ciliax BJ, and Dingledine R, Text mining biomedical literature for discovering gene-to-gene relationships: a comparative study of algorithms; IEEE Transactions on Computational Biology and Bioinformatics, 2005, 1; 2:62-76

Liu Y, Navathe SB, Pivoshenko A, Dasigi V, Dingledine R, Ciliax BJ, Text Analysis of MEDLINE for Discovering Functional Relationships among Genes: Evaluation of Keyword Extraction Weighting Schemes; Int J Data Min Bioinform., 2006, 1; 1:88-110

Liu, X., Serova, L., Kvetnanksy, R and Sabban, E.L. , Identifying the Stress Transcriptome in the Adrenal Medulla Following Acute and Repeated Immobilization; Annals of the New York Academy of Sciences, 2008; 1148:1-28

Lobsiger C, Boillée S, & Cleveland DW. , Toxicity from different SOD1 mutants dysregulates the complement system and the neuronal regenerative response in ALS motor neurons; PNAS, 2007, 18; 104:7319-7326 Open Project

Long JE, Cobos I. Potter GB and Rubenstein JLR. , Dlx1&2 and Mash1 Transcription Factors Control MGE and CGE Patterning and Differentiation Through Parallel and Overlapping Pathways; Cerebral Cortex, 2009; 19:96-106

Long JE, Swan C, Liang W, Cobos I, Potter G, & Rubenstein JL. , The Dlx1&2 and Mash1 Transcription Factors Control Striatal Patterning and Differentiation Through Parallel Pathways.; J. Comp. Neurol, 2008; 512:556-572

Long JE, Swan C, Liang WS, Cobos I. Potter GB and Rubenstein JLR, Dlx1&2 and Mash1 Transcription Factors Control Striatal Patterning and Differentiation Through Parallel and Overlapping Pathways; J. Comp. Neurol, 2009; 512:556-572

Lorincz MT, Zawistowski VA., Expanded CAG repeats in the murine Huntington’s disease gene increases neuronal differentiation of embryonic and neural stem cells.; Mol Cell Neurosci., 2009; 40:1-13 Open Project

Lynch WJ, Girgenti MJ, Breslin FJ, Newton SS & Taylor JR. , Gene Profiling the Response to repeated Cocaine Self-administration in Dorsal Striatum: A Focus on Circadian Genes. ; Brain Research , 2008; 1213:166-77

Marsh ED, Minarcik J, Campbell K, Brooks-Kayal AR, Golden JA., FACS-array gene expression analysis during early development of mouse telencephalic interneurons; Devel Neurobiol, 2008, 4; 68:434-45 Open Project

McGraw LA, Clark AG, & Wolfner MF. , Post-mating gene expression profiles of female Drosophila melanogaster in response to time and to four male accessory gland proteins; Genetics, 2008, 3; 179:1395-408

Melamed E, Arnold AP., Regional differences in dosage compensation on the chicken Z chromosome.; Genome Biol., 2007, 9; 8 Open Project

Mitchell, SA, Brown KM, Henry MM, Reaman GH, Lafleur B, and Stephan DA, Inter-platform comparability of microarrays in acute lymphoblastic leukemia; BMC Genomics, 2004, 1:5:71

Mudge J. et al. , Genomic convergence analysis of schizophrenia: mRNA sequencing reveals altered synaptic vesicular transport in post-mortem cerebellum.; PLoS ONE, 2008, 11; 3

Nakano I, Masterman-Smith M, Saigusa K, Paucar AA, Horvath S, Shoemaker L, Watanabe M, Negro A, Bajpai R, Howes A, Lelievre V, Waschek JA, Lazareff JA, Freije WA, Liau LM, Gilbertson RJ, Cloughesy TF, Geschwind DH, Nelson SF, Mischel PS, Terskikh AV, Kornblum HI., Maternal embryonic leucine zipper kinase is a key regulator of the proliferation of malignant brain tumors, including brain tumor stem cells.; J Neurosci Res., 2008, 1; 86:48-60 View Online

Palmer AA, Verbitsky M, Suresh R, Kamens HM, Reed CL, Li N, Burkhart-Kasch S, McKinnon CS, Belknap JK, Gilliam TC, Phillips TJ, Gene expression differences in mice divergently selected for methamphetamine sensitivity; Mamm Genome, 2005, 5; 16:291-305 View Online Open Project

Pan JZ, Wei, H, Hecker, JG, Tobias, J, Eckenhoff, RG, and Eckenhoff MF, Rat brain DNA transcript profile of volatile anesthetic exposure; PGEN, 2005 Open Project

Paper W, Kroeber M, Heersink S, Stephan DA, Fuchshofer R, Russell P & Tamm ER., Elevated amounts of myocilin in the aqueous humor of transgenic mice cause significant changes in ocular gene expression; Exp. Eye Res. , 2008, 3; 87:257-67

Petito CK, Torres-Munoz JE , F. Zielger F and McCarthy M, Brain accumulation of cytotoxic T lymphocytes in AIDS patients with HIV-1 encephalitis; J NeuroVirol, 2006; 12:272-283 Open Project

Petito CK, Torres-Muñoz JE, Zielger F, McCarthy M, Brain CD8+ and cytotoxic T lymphocytes are associated with, and may be specific for, human immunodeficiency virus type 1 encephalitis in patients with acquired immunodeficiency syndrome; J Neurovirol, 2006, 4; 12:272-83 Open Project

Pfisterer WK, Hank NC, Preul MC, Hendricks WP, Pueschel J, Coons SW, and Scheck AC, Diagnostic and Prognostic Significance of Genetic Regional Heterogeneity in Meningiomas; Neuro-Oncology, 2004, 6(4):290-9 Open Project

Ploski JE, Newton SS, & Duman RS., Electroconvulsive seizure-induced gene expression profile of the hippocampus dentate gyrus granule cell layer.; J. Neurochem. , 2006, 4; 99:1122-32 View Online

Puffenberger EG, Lince DH, Parod JM, Conway AR, Stafford PN, Donarum EA, Craig DW, Strauss KA, Dobrin SE, Dunckley T, Cardenas JF, Melmed KR, Wright CA, Morton DH, Flynn CR, and Stephan DA, Mapping of sudden infant death with dysgenesis of the testes syndrome (SIDDT) by a SNP genome scan and identification of TSPYL loss of function; Proc Natl Acad Sci, 2004, 101(32):11689-11694

Qiao X, Lu J, Hofmann SL. , Gene Expression Profiling in a Mouse Model of Infantile Neuronal Ceroid Lipofuscinosis Reveals Upregulation of Immediate Early Genes and Mediators of the Inflammatory Response; BMC Neuroscience, 2007, 95; 16 Open Project

Rand M, Bland C, & Bond J. , Methylmercury activates Enhancer-of-Split and Bearded complex genes independent of the Notch receptor; Toxicol Sci., 2008, 1; 104:163-76 View Online Open Project

Ream MA, Chandra R, Peavey M, Ray AM, Roffler-Tarlov S, Kim HG, Wetsel WC, Rockman HA, Chikaraishi DM, High oxygen prevents fetal lethality due to lack of catecholamines.; Am J Physiol Regul Integr Comp Physiol., 2008, 295; 3:R942-53

Rosen GD, Pung CJ, Owens CB, Caplow J, Kim H, Mozhui K, Lu L, Williams RW, Genetic modulation of striatal volume by loci on Chrs 6 and 17 in BXD recombinant inbred mice; Genes, Brain, and Behavior, 2008 Open Project

Seal JL, Gornick MC, Gogtay N, Shaw P, Greenstein DK, Coffey M, Gochman PA, Stromberg T, Chen Z, Merriman B, Nelson SF, Brooks J, Arepalli S, Wavrant-De Vrieze F, Hardy J, Rapoport JL, & Addington AM. , Segmental uniparental isodisomy on 5q32-qter in a patient with childhood-onset schizophrenia; J. Med. Genet. , 2006; 10 View Online

Shilling, P.D., Saint Marie, R.L., Shoemaker, J.M., Swerdlow, N.R., Strain differences in the gating-disruptive effects of apomorphine: Relationship to gene expression in nucleus accumbens signaling pathways.; Biological Psychiatry, 2008, 8; 63:748-58 Open Project

Strauss KA, Puffenberger EG, Craig DW, Panganiban CB, Lee AM, Hu-Lince D, Stephan DA, Morton DH, Genome-wide SNP arrays as a diagnostic tool: clinical description, genetic mapping, and molecular characterization of Salla disease in an Old Order Mennonite population; Am J Med Genet A, 2005, 3; 138:262-7 View Online

Strauss KA, Puffenberger EG, Huentelman MJ, Gottlieb S, Dobrin SE, Parod JM, Stephan DA, Morton DH, Recessive symptomatic focal epilepsy and mutant contactin-associated protein-like 2; N Engl J Med, 2006, 13; 354:1370-7 View Online

Sun R., Peng, S., Chen X., Zhang H. and Rizzolo L.J. , Diffusible retinal secretions regulate the expression of tight junctions and other diverse functions of the retinal pigment epithelium.; Mol. Vis., 2008; 14:2237-2262

Tanis KQ, Duman RS, Newton SS., CREB binding and activity in brain: regional specificity and induction by electroconvulsive seizure.; Biological Psychiatry, 2008, 7; 63:710-20

Tüysüz B, Bayrakli F, Diluna ML, Bilguvar K, Bayri Y, Yalcinkaya C, Bursali A, Ozdamar E, Korkmaz B, Mason CE, Ozturk AK, Lifton RP, State MW, Gunel M., Novel NTRK1 mutations cause hereditary sensory and autonomic neuropathy type IV: demonstration of a founder mutation in the Turkish population.; Neurogenetics., 2008, 2; 9:119-25

Vallejo-Illarramendi, A. Zang, K., and Reichardt, L.F, Focal adhesion kinase is required for neural crest cell morphogenesis during cardiovascular development; J. Clin. Invest, 2009; 119:2218-2230

Wada K, Howard JT, McConnell P, Lints T, Rivas MV, Whitney O, Horita H, Patterson MA, White SA, Scharff C, Heasler S, Zhao S, Sakaguchi H, Hagiwara M, Shiraki T, Hirozane-Kishikawa T, Skene P, Hayashizaki Y, Carninci P, Jarvis ED. , A molecular neuroethological approach for identifying and characterizing a cascade of behaviorally regulated genes. ; Proc. Natl. Acad. Sci., 2006; 103:15212-15217

Walsh T et al. , Rare Structural Variants Disrupt Multiple Genes in Neurodevelopmental Pathways in Schizophrenia ; Science, 2008, 5875; 320:539-43 View Online

Wang X, Blagden C, Fan J, Nowak SJ, Taniuchi I, Littman DR, Burden SJ, Runx1 prevents wasting, myofibrillar disorganization, and autophagy of skeletal muscle; Genes and Development, 2005, 14; 19:1715-22 View Online Open Project

Wilson DN, Chung H, Elliot R, Bremer D, George D. Koh S, Microarray analysis of postictal transcriptional regulation of neuropeptides; J Mol Neurosci, 2005, 3; 25:285-98 View Online Open Project

Winden KD, Oldham MC, Mirnics K, Ebert PJ, Swan CH, Levitt P, Rubenstein JL, Horvath S, Geschwind DH The , The organization of the transcriptional network in specific neuronal classes; Mol Syst Biol, 2009, 291; 5 View Online

Yan B, Neilson KM & Moody SA, FoxD5 plays a critical upstream role in regulating neural fate and onset of differentiation; Developmental Biology. , 2009 Open Project

Yan, B., K.M. Neilson and S.A. Moody, FoxD5 plays a critical upstream role in regulating neural fate and onset of differentiation; Developmental Biology , 2009; 329:80-95

Yan, B., K.M. Neilson and S.A. Moody, Notch signaling downstream of foxD5 promotes neural ectodermal transcription factors that repress neural differentiation. ; Developmental Dynamics , 2009; 238:1358-1365

Zhao X, Pearson KE, Stephan DA, Russell P, Effects of Prostaglandin Analogues on Human Ciliary Muscle and Trabecular Meshwork Cells; Invest Ophthalmol Vis Sci, 2003, 44:1945-1952

Zhao X, Ramsey K, Stephan DA and Russell P, Gene and protein expression changes in human trabecular meshwork cells treated with transforming growth factor; Invset Ophthalmol Vis Sci, 2004, 45(11):4023-4034 Open Project

Publications in Press

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Drozdov I, Kidd M, Gustafsson BI, Mane S, Hauso O, Pfragner R, & Modlin IM. , G-protein coupled receptor pathways and CREB Targets in Small Intestinal Neuroendocrine Tumors. ; Genome Biol., 2008

Kasuya J, Kaas GA, Kitamoto T, A putative amino acid transporter of the SLC6 family is up-regulated by lithium and is required for resistance to lithium toxicity in Drosophila; Neuroscience, 2009; 163:825-837

Kasuya J, Kaas GA, Kitamoto T, Effects of lithium chloride treatment on the gene expression profiles in Drosophila heads; Neurosci Res , 2009; 64:413-420

Ploski JE, Park KW, Ping J, Monsey MS, Schafe GE, Identification of Plasticity-Associated Genes Regulated By Pavlovian Fear Conditioning in the Lateral Amygdala.; J Neurochem, 2009 View Online

Tapanes-Castillo, A., Weaver, E.J., Smith, R.P., Kamei, Y., Caspary, T., Hamilton-Nelson, K.L., Slifer, S.H., Martin, E.R., Bixby, J.L. and Lemmon, V.P., A modifier locus on chromosome 5 contributes to L1 cell adhesion molecule X-linked hydrocephalus in mice. ; Neurogenetics, 2009

Vallejo-Illarramendi A, Zang K, & Reichardt LF. , Focal adhesion kinase is required for neural crest cell morphogenesis during cardiovascular development. ; J. Clin. Invest., 2009

Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Yang S-P, 1, Lovell P, Velho T, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Lin Y-C, George J, Sweedler J, , Southey B, Gunaratne P, Watson M, Nam K, Backstrom N, Smeds L, Nabholz B, Itoh Y, Whitney O, Pfenning AR, Howard JT, Völker M, Skinner BM, Griffin DK, Ye L, Flicek P, Quesada V, Velasco G, Lopez-Otin C, Puente XS, Olender T, Lancet D, Smit AFA, Hubley R, Konkel MK, Walker JA, Batzer MA, Gu W, Pollock DD, Chen L, Cheng Z, Eichler EE, Stapley J, Slate J, Ekblom R, Birkhead T, Burke T, Burt D, Scharff C, Adam I, Richard H, Sultan M, Soldatov A, Lehrach H, Edwards S, Yang S-P, Graves T, Fulton L, Nelson J, Chinwalla A, Hou A, Mardis ER, Wilson RK.; The genome of the zebra finch: special insights into vocal learning and communication. ; Nature

Publications in Preparation

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Amrita S Nayak, Eylem Onem, Bistra Nankova, Edmund F. LaGamma, Hypoglycemia Associated Autonomic Failure: a molecular explanation for a clinical paradox; Ped. Res

Bolognani F, Contente-Cuomo T &Perrone-Bizzozero NI. , Novel features of the recognition motifs and biological functions of HuD revealed by genome wide identification of its targets.

Borges K, Shaw R, Greene JG, and Dingledine R, The dentate gyrus plays the main role in hippocampal seizure preconditioning

Borges K, Shaw R, and Dingledine R, Biological processes prevailing in different hippocampal cell layers

Brown KM, Henry M and Stephan DA, Towards improved diagnostics of pediatric tumors using mRNA expression profiling

Brown KM, LaFleur B, Pillai R, Henry M, Pearson K, Mitchell S, King W, Reaman G, and Stephan DA, Microarray analysis of expression associated with disease relapse in acute lymphoblastic leukemia (ALL)

Coon KD, Dunckley T, and Stephan DA, A generic research pipeline leading to validated early molecular diagnostics and new therapies for common disorders

Craig, DW and Stephan DA, Identification of therapeutic protein targets through high-density SNP genotyping

Cudrici C, Zafranskaia E, Weerth S, Chen HH, Gherman A, Rus V, Raine C, Shin ML, Rus H, Effect of Complement C5 on Gene Expression Profile in Experimental Autoimmune Encephalomyelitis (EAE)

DelParigi A, Page GP, Allison DB, Beach T, Stephan DA, Reiman EM, and Tataranni PA, Neuroimagenomics for the study of human obesity

Gao X and Tourtellotte W, Nerve growth factor (NGF) mediated target gene regulation in human neuroblastoma

Gasiorowski JZ, Russell P, Stephan DA, Nealey PF & Murphy CJ. , Topography Induced Gene Expression in Vascular Endothelial Cells

Gendleman B, Tavela, E., Brautigam SE, Pearson KE, Liang W, Skene JH, Nelson SF, Stephan, DA.NINDS NIMH Microarray Consortium, Beyond Compliance: Development of Microarray Core Facility Enterprise Software Enables MIAME Verification, turning data into knowledge

George, E.D., Elwafi, H., Mane, S., Simen, A.A. , A robust mouse model of chronic behavioral and molecular changes resulting from early life stress.

George, E.D., Koga, Y., Raefski, A., Weissman, S., Mane, S., Simen, A.A., Whole-genome analysis of methylation changes associated with long-lasting behavioral changes after early life stress.

George, E.D., Koga, Y., Raefski, A., Weissman, S., Mane, S., Simen, A.A. , Genome-wide analysis of CpG methylation in aging prefrontal cortex.

Ghiani CA, Beltran-Parrazal L, Lelievre V, Sforza DM, Malvar J, Cole R, Smith DJ, Charles AC, Ferchmin PA, and de Vellis J, Regulation of neurogenesis by neurotransmitter receptor agonists or antagonists in embryonic cortical culture

Gurnett CA, Desruisseau DM, McCall K, Choi R, Meyer ZI, Talerico M, Miller SE, Ju J-S, Pestronk A, Connolly AM, Druley TE, Weihl CC, Dobbs MB, Myosin binding protein C1: a novel gene for autosomal dominant distal arthrogryposis type 1

Henry M, Brown KM and Stephan DA, Improved diagnostic and prognostic accuracy for pediatric tumors using expression profiling and microarray analysis of candidate genes

Howard JT, Pfenning A, Whitney O, Ward JM, Agarwal P, Jarvis ED., A cross-species transcript specific songbird oligo microarray for gene expression profiling

Igor Ponomarev; R.A. Harris; J.M. Lewohl; P.R. Dodd; R.D. Mayfield, Microarray analysis of gene expression in the amygdala of human alcoholics

Imamura Kawasawa Y , Johnson MB , Bogdanovic D, Mason CE, Krsnik Z, Gao F, Geschwind DH, State MW, Mane SM, Sestan N, Regional transcriptome of the human brain.; , 2008

J.M. Lewoh; R.A. Harris; P.R. Dodd; R.D. Mayfield, MicroRNA profiling in postmortem brain of human

Janine N. Martin, Thomas B. Bair, Nicole Bode, William T. Dauer, Pedro Gonzalez-Alegre., and proteomic profiling in a cellular model of DYT1 dystonia.; Neuroscience

Liu X, Kvetnanksy R and, Sabban EL, Comparison of changes in gene expression in adrenal medulla following cold and immobilization stress

Lusardi T, Pignataro G, Simon RP, & Saugstad JA , Regulation of microRNA expression by ischemic preconditioning

Martin J, Kim CE, Bair T, Dauer W, Gonzalez-Alegre P., Transcriptional profiling in cellular and animal models of DYT1 dystonia

Merriman B, Nelson SF, NINDS NIMH Microarray Consortium, Let the chips fall where they may: a multicenter cross-platform microarray comparison

Mohammad-Asef ., Nankova B, Tichenoff L, Taylor AR, La Gamma EF, & MacFabe DF., Intraventricular infusions of SCFA induce behavioral, neuropathological and epigenetic changes in rats relevant to autism spectrum disorders.

Nankova BB, MacFabe DF, & La Gamma EF., Short Chain Fatty Acids Induce Catecholaminergic Neurotransmission in PC12 Cells via a CREB Dependent Mechanism - Possible Relevance to Autism Spectrum Disorders

Nankova, B.B., Agarwal, R., MacFabe, D.F., La Gamma, E. F., Short Chain Fatty Acids Induce Catecholaminergic Neurotransmission in PC12 Cells via a CREB Dependent Mechanism - Possible Relevance to Autism Spectrum Disorders

Nankova, B.B., Tichenoff, L., Taylor, A.R., Mohammad-Asef Y., La Gamma, E. F., MacFabe, D.F. , Intraventricular infusions of SCFA induce behavioral, neuropathological and epigenetic changes in rats relevant to autism spectrum disorders

Nayak AS, Onem E, Nankova B, LaGamma EF. , Hypoglycemia Associated Autonomic Failure: a molecular explanation for a clinical paradox.

Palmer AA et al, Gene expression in response to treatment with methamphetamine in mouse lines selected from extreme sensitivity to methamphetamine

Paris, J.J., Chittur, S., Frye, C.A., Mating upregulates genes involved in steroid biosynthesis, neurogenesis, dopamine, and G-protein activity in naturally-receptive, mated, female rats.

Petito CK, Duran M, Shapshak , Torres-Munoz JE, Cortical gene expression profiles in AIDS and HIV encephalitis support the role of CXCR4 and diminished growth factors in HIV-1-related brain injury

Ploski JE, Park K, Ping J, Monsey MS & Schafe GE. , Identification of Plasticity-Associated Genes Regulated By Pavlovian Fear Conditioning in the Lateral Amygdala. ; Journal of Neuroscience, 2009

Ponder CA, Gilliam TC, Palmer AA, Combination of QTL mapping and gene expression to detect genes involved in fear conditioning

R.A. Harris; R.D. Mayfield, Genomic Identification of Biomarkers for Alcoholism

Stephan DA, Gendleman B, Brautigam SE, Chen J, Pearson KE, Hilmer S, Natale J, Liang W, Skene JH, Nelson SF and the NIH Neuroscience Microarray Consortium, Array portal: web-based management of high throughput expression profiling facilities

Thrivikraman KV , Kinkead B, Gernert KM, Nemeroff CB, Plotsky PM, and Owens M, The effect of corticosterone on diurnal differences in rat dorsal raphe gene expression

Torres-Munoz, JE, Logvinsky I, Dunnick JE, Petito CK , CK Differential gene expression in Down Syndrome fibroblasts and its relationship to tumor inhibition

Tourtellotte W, Whitehead J, and Albert Y., Egr3: A transcriptional regulator that mediates intrafusal muscle fiber fate specification.

Whitney O, Pfenning A, Howard JT, Blatti CA, Sinha S, Jarvis ED. , The singing genome: dynamic cascades of behaviorally regulated genes. ; Genome Research

Yan B, Neilson KM & Moody SA. , Developmental expression of novel transcriptional targets of the neural-promoting factor FoxD5; Developmental Dynamics , 2009

Yan, B., K.M. Neilson and S.A. Moody, Downstream targets of FoxD5 identified by microarray expression experiments

Yan, B., K.M. Neilson and S.A. Moody, Downstream targets of Six1 identified by microarray expression experiments.

Abstracts

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Howard JT, Pfenning A, Rivas M, Whitney O, Hara E, Roulhac P, Ward JM, Agarwal P, Jarvis ED. , Development of a transcript specific songbird oligo microarray for gene expression profiling. ; Society for Neuroscience , Annual Meeting - FF106 197.27, Oct 2009

Petrik D, Eisch A, & Hsieh J. , Isoxazole 9, a neurotransmitter-like small-molecule, promotes hippocampal adult neurogenesis in vivo. ; Society for Neuroscience, Annual Meeting, Oct 2009

Kaas AG, Kasuya J, Kitamoto T, Possible involvement of the calcineurin A subunit gene, CanA-14F, in the neurological phenotype of the lithium-responsive Drosophila mutant, Shudderer; Society for Neuroscience, Annual Meeting, Oct 2009

Kasuya J, Kaas AG, Kitamoto T, A putative amino acid transporter of the SLC6 family is up-regulated by lithium and is required for resistance to lithium toxicity in Drosophila; Cold Spring Harbor Laboratory, Sep 2009

Moody, S.A., Mhaske, P., Klein, S.L., Yan, B. and Neilson, K.M. , foxD5 regulates neural ectodermal fate via both transcriptional repression and activation; International Society for Developmental Biology, Edinburgh, Scotland, Sep 2009

Grant, P., Yan, B., D. Johnson and S.A. Moody. , Identification of novel maternal transcripts localized to the Xenopus animal hemisphere by microarray analyses.; Society for Developmental Biology, Jul 2009

Kasuya J, Kaas GA, Kitamoto T, The lithium-inducible solute carrier 6 transporter plays a critical role in resistance to lithium toxicity in Drosophila; 50th Annual Drosophila Research Conference, Mar 2009

Leffert JJ, Taylor MM, Westman S, Lin A, Lee J, Muralidharan A, Lorberg B, Zhao H, Newton SS, Mane S, Epperson CN, Blumberg H, Bhagwagar Z, Gene-expression networks as predictors of response to lithium in bipolar depression; Society for Neuroscience, Annual Meeting , Nov 2008

Feng YE, Ying CHEN, Tom HU, Jenny HOANG, Qing LU, TCF7l2/ß-catenin interaction mediates Wnt signaling in inhibiting oligodendrocyte myelination ; Society for Neuroscience, Annual Meeting , Nov 2008

Wang DY, Ray A, Ergorul C, & Grosskreutz CL, Gene expression profiling in rat retinal ganglion cells after experimental elevation of intraocular pressure; Association for Research in Vision and Ophthalmology , May 2008

Correa-Cerros L, Mandell JW., FGF2-stimulated astrocytes upregulate multiple negative feedback regulators of ERK signaling: implications for self regulation of astrogliosis.; Society for Neuroscience Annual Meeting, Annual Meeting , Nov 2007

Shilling, P.D., Saint Marie, R.L., Shoemaker, J., Brier, M., Mora, A.B., Ko, D., Neary, A.L., Swerdlow, N.R., Differential gene expression in nucleus accumbens signal transduction pathways in rat strains that exhibit differences in the gating disruptive effects of apomorphine.; Society for Neuroscience , Annual Meeting , Nov 2007

Lorincz MT, Zawistowski V, Albin RL, & O’Shea KS. , Expanded CAG repeats augment differentiation of stem cells to neuronal precursors and post mitotic neurons.; American Academy of Neurology , Annual Meeting , Nov 2007

Guarnieri DJ, Gray SM, Trinko R & DiLeone RJ. , Expression Analysis of Genes Regulated Under High-fat or Restricted Feeding Conditions.; Society for Neuroscience, Annual Meeting , Nov 2007

J. Martin and P. Gonzalez-Alegre, Gene expression profiling in a cellular model of DYT1 dystonia. ; Society for Neuroscience , Annual Meeting , Nov 2007

Perrone-Bizzozero N, Contente T, Stephan DA, & Bolognani F. , Identification of novel targets of the neuronal RNA-binding protein HuD by ribonomics; , Society for Neuroscience Conference , Nov 2007

La Gamma EF & Nankova BB, Microarray analyses of butyrate regulated genes: a window to CNS; Society for Neuroscience , Annual Meeting , Nov 2007

Frye, C.A., Paris, J.J., Chittur, S., Microarray analyses of midbrain tissues from female mated and unmated rats indicates increased expression of genes involved in steroid biosynthesis, neurogenesis, dopamine receptor, and G-protein activity. ; Society for Neuroscience , Annual Meeting , Nov 2007

Saugstad JA, Pignataro G, Lambert MJ, Farr CD, Simon RP & Lusardi TA , Role for preconditioning-induced changes in mouse brain microRNA expression as a novel mechanism underlying delayed ischemic tolerance; Society for Neuroscience , Nov 2007

Nankova BB, MacFabe DF, & La Gamma EF. , Short chain fatty acids regulate monoamine neurotransmission:; Society for Neuroscience , Annual Meeting , Nov 2007

Kitamoto T, Kaas G, Ishimoto H, Kasuya J, Calcineurin and innate immune response genes are upregulated in Shudderer, the lithium responsive neurological mutant in Drosophila; Society for Neuroscience, Annual Meeting, Oct 2007

Kaas GA, Ishimoto H, Kasuya J, Kitamoto T, Phenotypic analysis of lithium-responsive neurological mutant, Shudderer; Cold Spring Harbor Laboratory, The Neurobiology of Drosophila Meeting, Oct 2007

Hofmann SL, Lu JY & Li Y. , Palmitoyl-Protein thioesterase and the molecular basis of infantile NCL; , 11th International Congress on Neuronal Ceroid Lipofuscinosis, Jul 2007

Frye, C.A., Paris, J.J., Chittur, S., Microarray analyses of midbrain tissues from female mated and unmated rats indicates increased expression of genes involved in steroid biosynthesis, neurogenesis, dopamine receptor, and G-protein activity.; Hudson Berkshire Society for Neuroscience Chapter, Annual Meeting , Feb 2007

Charizopoulou N. & Noben-Trauth K. , Transcriptome analysis of cochleae from normal and hearing impaired strains; NIDCD, Intramural Retreat , Nov 2006

Saugstad JA, Pignataro G, Simon RP & Lusardi T. , Regulation of mouse brain microRNAs by ischemic preconditioning; Society for Neuroscience , Oct 2006

Kaas GA, Ishimoto H, Kasuya J, Kitamoto T, Shudderer: a Drosophila model to study the molecular mechanisms of lithium action; Society for Neruoscience, Oct 2006

Milan F, Rosenthal MJ, Bernard G, Amyloidosis of the brain and defective innate immunity in Alzheimer’s disease patients; Alzheimer's Association, The International Conference on Alzheimer's Disease and Related Disorders, Jul 2006

Lusardi T, Pignataro G, Simon RP, Saugstad JA , Regulation of microRNAs by ischemic preconditioning; , 71st Cold Spring Harbor Symposium: Regulatory RNAs, Jun 2006

Cudrici C, Zafranskaia E, Weerth S, Chen HH, Gherman A, Rus V, Raine C, Shin ML, Rus H, Effect of Complement C5 on Gene Expression Profile in Experimental Autoimmune Encephalomyelitis (EAE); American Association of Immunologists Meeting, May 2006

Bullock WM, Paz RD, Roberts R, Andreasen NC and Perrone-Bizzozero NI, Gene expression alterations in the cerebellum of patients with schizophrenia revealed by DNA microarray analysi; American Society Neurochemistry, Annual Meeting, Mar 2006

Palmer AA, Veenstra-Vander Weele J, Verbitsky M, Suresh, R, Qaadir A, Kamens HM, Belknap JK, Gilliam TC, Cook EH, Phillips TJ, de Wit H, Casein kinase 1 epsilon modulates sensitivity to stimulant drugs in both mice and humans: a translational genetic study; American College of Neuropsychopharmacology, Annual Meeting, Dec 2005

Ghiani CA and de Vellis J. , Nicotinic receptor agonists and antagonists present in tobacco affect cellular programs in the developing brain. ; , 4th World Assembly on Tobacco Counters Health, Dec 2005

Bough, K., B Hassel, J Wetherington, R Shaw, R Dingledine, Anticonvulsant mechanisms of the ketogenic diet consistent with chronic changes in energy metabolism; Society for Neuroscience, Annual Meeting, Nov 2005

Plosk JEi, Duman RS, Sathyanesan SN, Antidepressant-induced gene expression changes in hippocampal subfields feasibility of laser microdissection and RNA amplification; Society For Neuroscience, Annual Meeting, Nov 2005

Okamoto H, Newton SS, Suda S, Duman RS, Chronic antidepressant treatments up-regulate neurogenic factors in rat hippocamus: Role of WNT; Society For Neuroscience, Annual Meeting, Nov 2005

Girgenti MJ, Collier EF, Ploski J, Sathyanes SN, Electroconvulsive seizure increases vascular density in the hippocampal molecular layer; Society For Neuroscience, Annual , Nov 2005

Wang R, Zhang D, Genome-wide identification of marker genes for lower motoneurons using gene expression profiling; Society For Neuroscience, Annual Meeting, Nov 2005

Tanis KQ, Newton SS, Duman RS , Identification of creb-mediated changes in gene transcription following electroconvulsive seizure program; Society For Neuroscience, Annual Meeting, Nov 2005

Liu X, Kvetnansky R, Serova L, and Sabban E , Microarray analysis of changes in gene expression in adrenal medulla of rats exposed to single immobilization stress; Soceity For Neuroscience, Annual Meeting, Nov 2005

Steen PA, Pham L, Mason M, Marik S, Ma C, Lefebvre Y, Hickmott PW, Microarray analysis of the adult rat S1 forepaw/lower jaw border during cortical reorganization; Society For Neuroscience, Annual Meeting, Nov 2005

Black SJ, Bomze HM, Dai, HH, Skene JHP, Prolonged expression of GAP-43 and CAP-23 induces a secondary program of gene expression that partially mimics the response to axon injury; Society for Neuroscience, Annual Meeting, Nov 2005

Ponder CA, Kliethermes CL, Drew MR, Muller JM, Das K, Crabbe JC, Gilliam T, Palmer AA, Short-term selected lines for fear conditioning: QTL, gene expression, learning and anxiety-like behaviors; Society for Neuroscience, Annual Meeting, Nov 2005

Gustavsson M, Mallard C, Vannucci SJ, Wilson MA, Johnston MV, and Hagberga H, Vascular contribution to brain protection after hypoxic preconditioning in the immature rat; Society for Neuroscience, Annual Meeting, Nov 2005

Hendricks WP, Coons SW, Scheck AC, Ramsey KE, Stephan DA, and Preul MC, Gene Expression Profiling and Immunohistochemical Screening Establish a Novel Tool for Clinicopathological Management of Meningiomas; AANS, Jun 2005

Hendricks WP, Coons SW, Scheck AC, Ramsey KE, and Preul MC, Immunohistochemical Screening Based on Gene Expression Profiles Predictive of Meningioma Recurrence; null, World Federation of Neuro-Oncology and European Association for Neuro-Oncology Meeting, May 2005

Thrivikraman K.V. , Kinkead B, Gernert KM, Nemeroff CB, Plotsky PM, and Owens M, The Effect of Corticosterone on Diurnal Differences in Rat Dorsal Raphe Gene Expression; Society of Biological Psychiatry, Annual Meeting, May 2005

Hendricks WP, Coons SW, Preul MC, Ramsey KE, and Scheck AC, Global expression profiles predict meningioma recurrence and reveal novel pathways leading to aggressive phenotypes: a new clinical model of meningioma aggression; AACR, Mar 2005

Borges K, Shaw R and Dingledine R, Identification of potential neuroprotective genes involved in seizure preconditioning in the hippocampus; null, American Epilepsy Society Meeting, Dec 2004

Hendricks WP, Pfisterer WP, Nieman RA, Ramsey KE, Coons SW, Stephan DA, Scheck AC and Preul MC, Characterization of molecular, genetic, and biochemical profiles associated with meningioma progression and recurrence; Society for Neuro-Oncology, Annual Meeting, Nov 2004

Hendricks WP, Scheck AC, Ramsey KE, Pfisterer WP, Coons SW, Stephan DA and Preul MC, Characterization of molecular profiles associated with meningioma progression and recurrence; American Association of Neurological Surgeons, Tumors of the Central Nervous System Satellite Symposium, Oct 2004

Fu W, Bailey S and Toth M, Differential gene expression in the hippocampus of 5-HT1A receptor knockout mice; Society for Neuroscience, Annual Meeting, Oct 2004

Tourtellotte W, Whitehead J and Albert Y, Egr3: A transcriptional regulator that mediates intrafusal muscle fiber fate specification; Society for Neuroscience, Annual Meeting, Oct 2004

Palmer AA, Ponder CA, Das K, Gilliam TC, Examination of Putatively Genetically Correlated Traits in Mouse Lines Divergently Selected for Differences in Fear Conditioning; Society for Neuroscience, Annual Meeting, Oct 2004

Ghiani GA, Beltran-Parrazal L, Lelievre V, Sforza DM, Malvar J, Neman J, Cole R, Smith DJ, Charles AC, Ferchmin PA, de Vellis J, Gene Expression is differentially regulated by activation of neurotransmitter receptor in primary cortical neuronal cultures; Society For Neuroscience, Annual Meeting, Oct 2004

Matsushita H, Johnston MV and Wilson MA, Gene expression in neonatal mice after hypoxic-ischemia: effect of erythropoietin pretreatment; Society for Neuroscience, Annual Meeting, Oct 2004

Greene JG, Greenamyre JT and Dingledine R, Gene expression profile of chronic complex I inhibition in an in vitro model of Parkinson's disease; Society for Neuroscience, Annual Meeting, Oct 2004

Ponder CA, Das K, Gilliam TC, Palmer AA, Identification of QTL and Gene Expression Differences Using Divergent Selection for Contextual Fear Conditioning in Mice; Society for Neuroscience, Annual Meeting, Oct 2004

Puffenberger EG, Lince DH, Parod JM, Conway AR, Stafford PN, Donarum EA, Craig DW, Strauss KA, Dobrin SE, Dunckley T, Cardenas JF, Melmed KR, Wright CA, Morton DH, Flynn CR, and Stephan DA, Mapping of sudden infant death with dysgenesis of the testes syndrome (SIDDT) by a SNP genome scan and identification of TSPYL loss of function; American Society of Human Genetics, Annual Meeting, Oct 2004

Dobrin SE, Pearson J, Parod J, Lince DH, Craig, DW, Cardenas J, Rosenow C, and Stephan DA, Meta analysis of high-density SNP profiles to assess SNPs as markers for genetic mapping; American Society of Human Genetics, Annual Meeting, Oct 2004

Borges K, Shaw R, Greene J and Dingledine R, Microarray analysis of three hippocampal cell populations before and after seizure preconditioning; Society for Neuroscience, Annual Meeting, Oct 2004

Hendricks WP, Pfisterer WP, Nieman RA, Ramsey KE, Coons SW, Stephan DA, Scheck AC and Preul MC, Molecular and biochemical analyses of alanine metabolism across meningioma grade and recurrence; American Association of Neurological Surgeons, Tumors of the Central Nervous System Satellite Symposium, Oct 2004

Gao X and Tourtellotte W, Nerve growth factor (NGF) mediated target gene regulation in human neuroblastoma; Society for Neuroscience, Annual Meeting, Oct 2004

Koh S, Chung H, Wilson D, Transcriptional regulation of neuropeptides in rat hippocampus after kainic acid-induced seizures; Society for Neuroscience, Annual Meeting, Oct 2004

Dunckley T, Beach TG, Ramsey KE, Caselli RJ, Reiman EM, Stanley M, Sue L, Rogers J, and Stephan DA, Mechanism of neurofibrillary tangle-induced neuronal degeneration leading to Alzheimer's Dementia; Alzheimer's Association, 9th International Conference on Alzheimer's Disease and Related Disorders, Jul 2004

Palmer A.A., Verbitsky M, Suresh R, Kamens HM, Reed CL., Li N, Burkhart-Kasch S, McKinnon CS, Belknap JK, Gilliam TC, Phillips TJ, Short-Term Selection Identifies a cis-Acting Expression QTL for Casein Kinase 1 Epsilon (Csnk1e) that May Influence Sensitivity to Methamphetamine; Complex Trait Consortium, Annual Meeting, Jul 2004

Pfisterer WP, Hendricks WP, Barnhard M, Coons SW, Scheck AC, Nieman RA, and Preul MC, 1H Spectroscopic Analysis of Meningiomas Demonstrates Specific Metabolic Changes Correlating with More Aggressive Clinical Features; American Association of Neurological Surgeons (AANS), May 2004

Pfisterer WP, Hank NC, Hendricks WP, Pueschel J, Coons SW, Preul MC, and Scheck AC, Diagnostic and/or Prognostic Significance of Genetic Regional Heterogeneity in Meningiomas; American Association of Neurological Surgeons (AANS), May 2004

Ghiani CA, Lelievre V, Sforza DM, Malvar J, Cole R, Smith DJ, Ferchmin PA, and de Vellis J, Regulation of Gene Expression by NMDA and Nicotine in Primary Cortical Neuronal Cultures; , First ISN Special Neurochemistry Conference, May 2004

Puffenberger EG, Lince DH, Parod JM, Conway AR, Stafford PN, Donarum EA, Craig DW, Strauss KA, Dobrin SE, Dunckley T, Cardenas JF, Melmed KR, Wright CA, Morton DH, Flynn CR, and Stephan DA, A high density SNP genome scan identifies a TSPYL mutation in swarey syndrome; Human Genome Organization, Annual Meeting, Apr 2004

Hendricks WP, Pfisterer WP, Nieman RA, Hank NC, Ramsey KE, Stephan DA, Preul MC and Scheck AC, Characterization of molecular, genetic, and biochemical profiles associated with meningioma progression and recurrence; American Association for Cancer Research, Annual Meeting, Mar 2004

Koh S, Xia H, Chung H, Mahadevia A, and Young AL, Environmental Enrichment reverses the impaired exploratory behavior and altered gene expression induced by early-life seizures; null, Epilepsia, Jan 2004

Koh S, Kruegel BR, Elliott RC and Chung H, Acute dendritic swelling, loss of dendritic complexity and alterations in gene expression induced by early-life seizures; Society for Neuroscience, Annual Meeting, Nov 2003

Nelson SF, et al (NINDS/NIMH Consortium), Cross-platform analysis; American Society of Human Genetics, Annual Meeting, Nov 2003

Greene JG, Dingledine R and Greenamyre JT, Gene expression profiling of midbrain dopamine neurons using laser capture microscopy and microarray analysis; Society for Neuroscience, Annual Meeting, Nov 2003

Bough KJ, Greene JG and Dingledine RJ, Ketogenic diet-induced changes in gene expression; Society for Neuroscience, Annual Meeting, Nov 2003

Donarum E, Stephan DA, Snead OC, Gupta M, and Gibson KM, Microarray-based pathogenesis modeling of murine succinate semialdehyde dehydrogenase (SSADH) deficiency; Society for Neuroscience, Annual Meeting, Nov 2003

Ghiani CA, Sforza DM, Valenzuela LA, Smith DJ, Ferchmin PA, and de Vellis J, Regulation of Gene Expression by NMDA and Nicotine in Cortical Neurons; Specialized Centers in Neuroscience Excellence in Neuroscience at Minority institutions, Annural Conference, May 2003

Koh S, Elliott RC, Chung H and Pearson, KE, Microarray-based expression profiling of genes regulated by early-life seizures; null, Epilepsia, Jan 2003

Donarum EA, Hautaniemi S, Graff J, Cheng Y, Mousses S, Kallioniemi O-P, Natale J, and Stephan DA, Novel developmentally regulated gene circuits in murine brain development: a template for understanding dysfunction and tumorigenesis; American Society of Human Genetics, Annual Meeting, Oct 2002

Talks

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Harry Ostrer , Disorders of Sex Determination: New Lingo, New Genes, New Mechanisms; Bethesda, MD , Dec 2009

Esther Sabban, Stress Transcription: Psychogenic Stress and cellular Plasticity.; Merida City, Mexico, Nov 2009

R.D. Mayfield, Functional organization of the brain transcriptome in alcoholic and nonalcoholic individuals ; San Diego, CA, Jun 2009

R.D. Mayfield, MicroRNA profiling in postmortem brain of human alcoholics ; San Diego, CA, Jun 2009

Saugstad J. , The Preconditioning Switch: Derepression of Messenger RNAs by MicroRNAs Leads to Increased Translation of Transcriptional Regulators; Spring Hippocampal Conference Verona, Italy , Jun 2009

Sestan N. , Genome-wide Analysis of Regional Gene Expression and Alternative Exon Usage in the Human Brain; Symposium for Neurogenomics and Neuroimaging of Developmental Disorders, May 2009

Sestan N. , Functional and evolutionary insights into human brain development through global transcriptome analysis. ; Allen Institute for Brain Science, Apr 2009

Saugstad J. , Role for MicroRNAs in Ischemic Tolerance; Society for Neuroscience , Washington, DC, Nov 2008

Gonzalez-Alegre P. , Does torsinA function as a transcriptional regulator in the nuclear envelope?; St. Louis, MO, Oct 2008

Saugstad J. , Mechanisms of Ischemic Preconditioning-Induced Tolerance; Vanderbilt Eye Symposium , Oct 2008

Moody S. , The Role of FoxD5 in Neural Plate Formation; 12th International Xenopus Conference, Germany. , Sep 2008

Sally A. Moody, Ph.D., The role of FoxD5 in neural plate formation; Mosel, Germany, Sep 2008

Kowa H, Matsui T, Bouzou B, Clark T, Freeman S, Frosch M, & Hyman B. , Complement pathways are upregulated in angular gyrus of PPA cases; International conference on Alzheimer's disease, Jul 2008

MacFabe, DF, Agarwal, R., Tichenoff, L., Taylor, AR, La Gamma, EF and Nankova, BB , Intraventricular Infusions of Enteric SCFA Induce Behavioral, Neuropathological and Epigenetic Changes in Rats - Further development of a Novel Rodent Model of Autism ; London UK, May 2008

Moody S. , Working out the Role of FoxD5 in the Gene Regulatory Network that Confers Neural Identity; University of Pennsylvania , May 2008

Sally A. Moody, Ph.D., Working out the role of FoxD5 in the gene regulatory network that confers neural identity; University of Pennsylvania, PA, May 2008

Saugstad J. , Role for MicroRNAs in Ischemic Tolerance; University of Wisconsin, Mar 2008

Frye C. , Membrane actions of progestins at dopamine Type 1-like and GABAA receptors depend upon initiation of signal transduction pathways; 5th International Meeting: Rapid Responses (Dublin, Ireland), Sep 2007

A. Palmer, Identifying genes that control sensitivity to methamphetamine in mouse and man: A combined QTL/eQTL approach; University of Chicago, Committee on Neurobiology Seminar Series, Dec 2006

A. Palmer, Translational Genetic Strategy for Identifying Genes for Sensitivity to Stimulant Drugs in Mouse and Man: A Combined QTL/eQTL Approach; University of Chicago, NIDA Training Grant, Dec 2006

A. Palmer, Translational genetic strategy for identifying genes for initial sensitivity to stimulants drugs: a combined QTL/eQTL approach; Rosalind Franklin University of Medicine and, Dec 2006

A. Arnold, Dosage compensation in birds versus mammals.; Society for Neuroscience; Atlanta, GA, Oct 2006

R. Dingledine, Biomarkers of epileptogenesis; NINDS Workshop, Washington DC, Sep 2006

R. Dingledine, Microarray studies of epilepsy; Gordon Conference, Aug 2006

E. Sabban, Transcriptional Expression Profiling of the Stressed Adrenal Medulla; Thirteen International Symposium on Chromaffin Cell Biology, Pucon, Chile, Jan 2006

A. Palmer, Behavioral genetic studies of methamphetamine sensitivity and fear learning in mice: a QTL/eQTL approach to finding candidate genes; University of Chicago, Department of Evolution and Ecology, Dec 2005

A. Palmer, Casein kinase 1 epsilon modulates sensitivity to stimulant drugs in both mice and humans: a translational genetic study; American College of Neuropsychopharmacology 44th annual meeting, Waikoloa, Hawaii, Dec 2005

A. Palmer, Integration of QTL mapping and gene-expression profiling in the search for behaviorally-relevant genes; Mount Sinai School of Medical, Department of Human Genetics, Dec 2005

A. Palmer, Integration of selective breeding, QTL mapping and gene-expression profiling in the search for fear learning genes in mice; New York University, Center for Neural Science, Dec 2005

C. Wesley, Notch Auto-Regulation and Neurogenesis in Drosophila; Rutgers University, New Jersey, Dec 2005

A. Palmer, Using selective breeding to identify candidate genes for methamphetamine-sensitivity and fear-related behavior; University of Cincinnati, Department of Psychiatry, Dec 2005

A. Palmer, Using selective breeding to identify genes controlling variability in methamphetamine and fear-related behaviors; Virginia Commonwealth University, Department of Psychiatry, Dec 2005

E. Sabban, Stress and Illness: A Molecular Biologist's View; McLean Hospital, Harvard Medical School, Neuroscience Seminar Series, Cambridge, MA, Sep 2005

G. Tosini, Gene Expression in the Retina and Pineal; Gordon Research Conference on Pineal Cell Biology; Oxford, UK, Aug 2005

A. Palmer, Short-term selective breeding for fear learning; Groningen, The Netherlands, Jun 2005

E. Sabban, Mechanism in the Regulation of Gene Expression for Dopamine Biosynthesis; Department of Neurology, Juntendo University School of Medicine, Tokyo, Japan, May 2005

E. Sabban, Stress: Molecular Neurobiological Mechanisms; Fujita Health University, Toyoake, Aichi, Japan, May 2005

E. Sabban, Stress: A Molecular Neurobiological Perspective ; Department of Cell Biology and Neuroscience Seminar Series, Rutgers University, Piscataway, New Jersey, Jan 2005

D. Stephan; Cincinnati, OH, NF1 Microarray Consortium Conference, Dec 2004

A. Palmer, Use of Selective Breeding to Study Complex Traits in Mice; Columbia University, Sackler Institute for Developmental Psychobiology, Dec 2004

A. Palmer, Using selective breeding to identify genes controlling variability in complex behavioral traits; University of Chicago, Department of Human, Dec 2004

D. Stephan; University of Arizona, Phoenix, AZ, Arizona Cancer Center Symposium, Nov 2004

D. Stephan; NIH, NINDS Council Meeting, Sep 2004

D. Stephan; Denver, CO, Mountain States Genetics Network, Jul 2004

S. Nelson; Washington, DC, NINDS GENSAT Meeting, May 2004

D. Stephan; Washington, DC, Affymetrix Partners Conference, May 2004

D. Craig, Autism: Genetics and Neurobiology; Barrow Neurological Institute, Phoenix, AZ, May 2004

Ghiani CA, Regulation of Gene Expression by NMDA and Nicotine in Primary Cortical Neuronal Cultures.; Department of Experimental Biology, University of Cagliari Cagliari, Italy., May 2004

D. Stephan; Berlin, Germany, HUGO/HGM 2004, Apr 2004

D. Stephan, NINDS Biomarkers in Multiple Sclerosis; Washington, DC, Apr 2004

J. Trent, Gene Discovery in Complex Disorders; Laguna Beach, CA, Mar 2004

D. Stephan; Barrow Neurological Institute, Grand Rounds, Phoenix, AZ, Feb 2004

A. Palmer, Gene Expression in Mouse Lines Divergently Selected for Response to Methamphetamine; Palisades, NY, Dec 2003

D. Stephan; San Diego, CA, NINDS GENSAT Advisory Meeting, Oct 2003

D. Stephan; Washington, DC, NINDS GENSAT Advisory Meeting, Oct 2003

Seth Debrin; San Diego, CA, Affymetrix Annual User Group Meeting, May 2003

D. Stephan; Southwest Autism Research and Resource Center, Phoenix, Arizona, Apr 2003

D. Stephan, Microarrays In Epilepsy; NIH, Oct 2002

A. Palmer, Use of genetic selection and gene expression analysis to identify genes and behaviors associated with fear learning in mice; Gordon Research Conference "Genes and Behavior," Ventura, CA, Feb 0006